- 1. CisGenome
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An integrated tool for tiling array, ChIP-seq, genome and cis-regulatory element analysis
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标签：ChIP-Seq, ChIP-on-chip, Motif analysis, Gene annotation retrieval
- 2. Repitools
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Toolbox of procedures to interrogate and visualize epigenomic data. Part of BioConductor
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标签：ChIP-Seq, ChIP-on-chip
- 3. CATCH
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A tool for exploring patterns in ChIP profiling data.
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标签：ChIP-Seq, ChIP-on-chip
- 4. MochiView
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Hybrid genome browser and motif visualization/analysis/management desktop software.
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标签：Genomics, ChIP-Seq, ChIP-on-chip, RNA-Seq, Motif analysis
